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Simple deterministic models
Simple stochastic models
Final size of an epidemic
Non-exponential passage times
Host-vector models
Macroparasite models
Time-varying parameters
Metapopulation models
Network models
Phylodynamic models
- Simple coalescent model
- R
Applications
Keeling and Rohani 2008
Bjornstad 2018
Appendices
- Style guide for notebooks

Continuous time, discrete state stochastic SIR model using the stochastic simulation algorithm

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